miRBase entry: nta-MIR160c

Stem-loop nta-MIR160c


Accession
MI0021332
Description
Nicotiana tabacum nta-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
4 open access papers mention nta-MIR160c
(10 sentences)

Sequence

aacuuggaugUGCCUGGCUCCCUGUAUGCCAcacacuuucaccaauccgcgaguucuuugauuggcugaucaguggguggcgugcgaggagccaagcauaccacauuaua
....(((.(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)))))))).......

Structure
---aacu   a     C       C          a    -u   -      cgcga 
       ugg ugUGC UGGCUCC UGUAUGCCAc cacu  uca ccaauc     g
       ||| ||||| ||||||| |||||||||| ||||  ||| ||||||      
       acc auacg accgagg gcgugcggug guga  agu gguuag     u
auauuac   -     a       a          g    cu   c      uuucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR160c

Accession MIMAT0024642
Description Nicotiana tabacum nta-miR160c mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28