miRBase entry: nta-MIR160d

Stem-loop nta-MIR160d


Accession
MI0021333
Description
Nicotiana tabacum nta-MIR160d precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
4 open access papers mention nta-MIR160d
(8 sentences)

Sequence

agaaguuuugUGCCUGGCUCCCUGCAUGCCAcacgcuuucaccaauccgcggguucuuugauuggcugaucaguggguggcgugcgaggagccaagcauaccacauuaua
....((..(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)))))..))......

Structure
--agaa  uu     C       C          a    -u   -      cgcgg 
      gu  ugUGC UGGCUCC UGCAUGCCAc cgcu  uca ccaauc     g
      ||  ||||| ||||||| |||||||||| ||||  ||| ||||||      
      ca  auacg accgagg gcgugcggug guga  agu gguuag     u
auauua  cc     a       a          g    cu   c      uuucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR160d

Accession MIMAT0024643
Description Nicotiana tabacum nta-miR160d mature miRNA
Sequence 11 - UGCCUGGCUCCCUGCAUGCCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28