miRBase entry: nta-MIR164a

Stem-loop nta-MIR164a


Accession
MI0021336
Description
Nicotiana tabacum nta-MIR164a precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
3 open access papers mention nta-MIR164a
(12 sentences)

Sequence

gugaucaagaUGGAGAAGCAGGGCACGUGCAuuacuaacucaugcacaggaauugucagugaaaauuuuuauggcauucaucugacaucauaauucauaguaccauuacuguacuuccuagcguaguggaaaauaaugguuugguacuucacauguauguguuuccguuuccguugaguuaguucuucaugugccugucuuccccaucaugaucacuc
(((((((.(((((.((((..(((((((((....(((((((((((....((((.((((((((((.............)))).))))))...........(((((((..(((((..((((.........))))....))))).))))))).((((....)))).)))).....)).)))))))))....)))))))))..)))).))))).)))))))..

Structure
--       a     A    CA         CAuu         -  -caca    uugucagugaaaauuuuuauggcauucaucugacaucauaauucau       uu     --ac    uag 
  gugauca gaUGG GAAG  GGGCACGUG    acuaacuca ug     ggaa                                              aguacca  acugu    uucc   c
  ||||||| ||||| ||||  |||||||||    ||||||||| ||     ||||                                              |||||||  |||||    ||||   g
  cacuagu cuacc cuuc  uccguguac    ugauugagu gc     ccuu                                              ucauggu  uggua    aagg   u
cu       a     c    ug         uucu         u  cuuug    --------------------------------uguguauguacacu       -u     auaa    uga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR164a

Accession MIMAT0024646
Description Nicotiana tabacum nta-miR164a mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28