miRBase entry: nta-MIR166a

Stem-loop nta-MIR166a


Accession
MI0021339
Description
Nicotiana tabacum nta-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
3 open access papers mention nta-MIR166a
(10 sentences)

Sequence

uguuuugaggggaauguugucuggcucgaggucacuaacuugauccaauuauuugaacucucuuucccuuuuugagaugucaucuccauuaauuaacaaauagaucaauaguucuugauuggcauuagggaucauggaucaugguuuagugucgUCGGACCAGGCUUCAUUCCCCccaaaauuu
.((((((.((((((((..((((((.((((.(.(((((((((((((((......(((..((((...........))))..)))....................((((..((((.((.....)).))))..)))).))))))).)).)))))).).)))).))))))..)))))))).))))))..

Structure
-u      a        uu      c    g u      -  -       auuauuugaacucucuuucccuuuuugagaugucaucuccauuaauuaacaaaua    aa    u  u 
  guuuug ggggaaug  gucugg ucga g cacuaa cu ugaucca                                                       gauc  uagu cu g
  |||||| ||||||||  |||||| |||| | |||||| || |||||||                                                       ||||  |||| || a
  uaaaac CCCCUUAC  CGGACC GGCU c gugauu gg acuaggu                                                       cuag  auua gg u
uu      c        UU      A    g u      u  u       ------------------------------------------------------a    gg    c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR166a

Accession MIMAT0024649
Description Nicotiana tabacum nta-miR166a mature miRNA
Sequence 155 - UCGGACCAGGCUUCAUUCCCC - 175
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28