miRBase entry: nta-MIR166e

Stem-loop nta-MIR166e


Accession
MI0021343
Description
Nicotiana tabacum nta-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
3 open access papers mention nta-MIR166e
(5 sentences)

Sequence

ucaguugaggggaauguugucuggcucgaggucaccaacuagauccauaagcuccacuuuaugcuuauuugaacauaaagauuaguuuuguaauauaaagauucguugauuauaugaaaagggguuauggaucaugaguuaguguugUCGGACCAGGCUUCAUUCCCCccaauuguua
.((((((.((((((((..((((((.((((.(.(((.((((.(((((((((.((((.(((((((.((((..((((..........)))).))))))))))).(((((.......)))))..)))))))))))))...)))).))).).)))).))))))..)))))))).))))))...

Structure
--u      a        uu      c    g u   c    --a         g    -------------------a       c    uu    auaa 
   caguug ggggaaug  gucugg ucga g cac aacu   gauccauaa cucc                    cuuuaug uuau  gaac    a
   |||||| ||||||||  |||||| |||| | ||| ||||   ||||||||| ||||                    ||||||| ||||  ||||     
   guuaac CCCCUUAC  CGGACC GGCU u gug uuga   cuagguauu gggg                    gaaauau aaug  uuug    g
auu      c        UU      A    g u   a    gua         -    aaaaguauauuaguugcuua       -    -u    auua 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature nta-miR166e

Accession MIMAT0024653
Description Nicotiana tabacum nta-miR166e mature miRNA
Sequence 148 - UCGGACCAGGCUUCAUUCCCC - 168
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28