miRBase entry: nta-MIR166f

Stem-loop nta-MIR166f


Accession
MI0021344
Description
Nicotiana tabacum nta-MIR166f precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
3 open access papers mention nta-MIR166f
(5 sentences)

Sequence

agcuuugaggggaauguugucuggcucgaagccacuaucuccucuugauuuaaccuaguucaagaaguaguaugaguauuuuugucaaaguuguaugaacaaacaauaaugagagauagugucgUCGGACCAGGCUUCAUUCCCCccaauuugga
....(((.((((((((..((((((.((((.(.(((((((((.((((((.(((...))).))))))...................(((..(((((........)))))..)))))))))))).).)))).))))))..)))))))).)))......

Structure
--agcu   a        uu      c    a c         ----------------------------------------------c      u   a 
      uug ggggaaug  gucugg ucga g cacuaucuc                                               ucuuga uua  
      ||| ||||||||  |||||| |||| | |||||||||                                               |||||| ||| c
      aac CCCCUUAC  CGGACC GGCU c gugauagag                                               agaacu gau  
agguuu   c        UU      A    g u         aguaauaacaaacaaguauguugaaacuguuuuuaugaguaugauga      u   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR166f

Accession MIMAT0024654
Description Nicotiana tabacum nta-miR166f mature miRNA
Sequence 125 - UCGGACCAGGCUUCAUUCCCC - 145
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28