miRBase entry: nta-MIR168b

Stem-loop nta-MIR168b


Accession
MI0021353
Description
Nicotiana tabacum nta-MIR168b precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
3 open access papers mention nta-MIR168b
(3 sentences)

Sequence

ugucucuaauUCGCUUGGUGCAGGUCGGGACuaauucgccggcggcaaucacgucggcggugauuauucuacgaagcuuagauguacgaaguuaucaacaauguuccuuugcggcgaaauuugggucccgccuugcaucaacugaauuggagacugc
.((((((((((((.((((((((((.(((((((...(((((((((.......)))))))))((((..((((((...........))).)))...)))).(((..(((((....)).)))..)))))))))).)))))))))).))))))))))))...

Structure
--u            C          U       ------------------------------------------------------------aau         gc 
   gucucuaauUCG UUGGUGCAGG CGGGACu                                                               ucgccggcg  a
   |||||||||||| |||||||||| |||||||                                                               |||||||||  a
   cagagguuaagu aacuacguuc gcccugg                                                               ggcggcugc  u
cgu            c          c       guuuaaagcggcguuuccuuguaacaacuauugaagcauguagauucgaagcaucuuauuagu         ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR168b

Accession MIMAT0024663
Description Nicotiana tabacum nta-miR168b mature miRNA
Sequence 11 - UCGCUUGGUGCAGGUCGGGAC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28