Stem-loop nta-MIR168e

Accession

MI0021356

Description

Nicotiana tabacum nta-MIR168e precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

3 open access papers mention nta-MIR168e
(3 sentences)

Sequence

ggucucuaauUCGCUUGGUGCAGGUCGGGAAcugacucaccggugacgcuguccgcgccggaaucgguggcguuaguuucguugauauuuuguuugcauuuaucgauauuuagagagcucucuuuaggacuuauuuguuaguaauuuguuuuguugaaauuaacuugauguauguguagauaaguagagaguguuuacccccgguugguuaaguaauagauaugaagagaguucauuuuuuuuuuguuuuuaauaaauuaguuauguaugaaagugcgccucgucuauggcuuaaguuuguucccgccuugcaucaacugaaucggugaccgc
((((.((.(((((.((((((((((.(((((((.((((..((((((.((.....))))))))((((((.((.((((.((((........(((((((((((.((((((...(((((((....)))))))(((......)))..((((((.........))))))..))))))...)))))))))))..)))).))...))))))))))...(((((.((((((.....(((.((.(((((((.........((((....))))........))))))).))))))))))).))))))))).))))))).)))))))))).))))).)).))))..

Structure

--    u  a     C          U       u    ----------------------------------------------------------------caccggugacgcuguccgcgccgg      u  c  ---  g    guugauau           --u      uauuuagagagcucucuuuaggacuuau 
  gguc cu auUCG UUGGUGCAGG CGGGAAc gacu                                                                                        aaucgg gg gu   ua uuuc        uuuguuugcau   uaucga                            u
  |||| || ||||| |||||||||| ||||||| ||||                                                                                        |||||| || ||   || ||||        |||||||||||   ||||||                             
  ccag gg uaagu aacuacguuc gcccuug uuga                                                                                        uuggcc cc ca   gu agag        gaauagaugug   guaguu                            u
cg    u  c     c          c       u    auucgguaucugcuccgcgugaaaguauguauugauuaaauaauuuuuguuuuuuuuuuacuugagagaaguauagauaaugaauugg      -  -  uuu  g    ------au           uau      caauuaaaguuguuuuguuuaaugauug 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR168e

• Accession: MIMAT0024666
• Description: Nicotiana tabacum nta-miR168e mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28