miRBase entry: nta-MIR171b

Stem-loop nta-MIR171b


Accession
MI0021377
Description
Nicotiana tabacum nta-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
5 open access papers mention nta-MIR171b
(8 sentences)

Sequence

uaaaggaagcgauguuggugagguucaauccgaagacguguuuacguuuuguuuucguaaaaaacgaucucagaUUGAGCCGCGCCAAUAUCACUuccuauauau
...((((((.((((((((((.(((((((((.((.(((((.((((((.........))))))..))).)))).))))))))).)))))))))).))))))......

Structure
---uaa      c          a         c  a  -   -g      uuu 
      aggaag gauguuggug gguucaauc ga ga cgu  uuuacg   u
      |||||| |||||||||| ||||||||| || || |||  ||||||   g
      uccuUC CUAUAACCGC CCGAGUUag cu cu gca  aaaugc   u
uauaua      A          G         a  -  a   aa      uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR171b

Accession MIMAT0024687
Description Nicotiana tabacum nta-miR171b mature miRNA
Sequence 75 - UUGAGCCGCGCCAAUAUCACU - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28