Stem-loop nta-MIR172a

Accession

MI0021379

Description

Nicotiana tabacum nta-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

6 open access papers mention nta-MIR172a
(20 sentences)

Sequence

uuuugcagaugcagcaucuucaagauucacauauaguauauuuuauggaguucaauugugggagaaaaaaauuaaauuuucuugcucccuauggcuccuuaauuuaauaugAGAAUCUUGAUGAUGCUGCAGcagcaaugaa
..((((...(((((((((.(((((((((.(((((....((..(((.(((((.((.....(((((((.(((((...))))).)).)))))..))))))).)))..))))))).))))))))).)))))))))...))))....

Structure

--uu    aga         u         a     agua  uu   u     u  auugu     -  a     u 
    uugc   ugcagcauc ucaagauuc cauau    ua  uua ggagu ca     gggag aa aaaau  
    ||||   ||||||||| ||||||||| |||||    ||  ||| ||||| ||     ||||| || ||||| a
    aacg   ACGUCGUAG AGUUCUAAG guaua    au  aau ccucg gu     cccuc uu uuuua  
aagu    acG         U         A     ----  uu   u     -  ---au     g  c     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR172a

• Accession: MIMAT0024689
• Description: Nicotiana tabacum nta-miR172a mature miRNA
• Sequence: 112 - AGAAUCUUGAUGAUGCUGCAG - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28