miRBase entry: nta-MIR172c

Stem-loop nta-MIR172c


Accession
MI0021381
Description
Nicotiana tabacum nta-MIR172c precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
6 open access papers mention nta-MIR172c
(20 sentences)

Sequence

guuugcggauguagcaucaucaagauucacaugcaaaacgcauggugaugaaaugauauuaauggccauggcagcuuuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaa
..((((.(((((((((((((((((((((.(((.(((((.(((((((.((............)).)))))....)).)))))...))).))))))))))))))))))))).))))...

Structure
-gu    g                     a   --g     c  ----     g  gaaau 
   uugc gauguagcaucaucaagauuc cau   caaaa gc    auggu au     g
   |||| ||||||||||||||||||||| |||   ||||| ||    ||||| ||      
   aacg cUACGUCGUAGUAGUUCUAAG gug   guuuu cg    uaccg ua     a
aau    a                     A   gaa     u  acgg     g  auuau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR172c

Accession MIMAT0024691
Description Nicotiana tabacum nta-miR172c mature miRNA
Sequence 88 - AGAAUCUUGAUGAUGCUGCAU - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28