miRBase entry: nta-MIR172h

Stem-loop nta-MIR172h


Accession
MI0021386
Description
Nicotiana tabacum nta-MIR172h precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
6 open access papers mention nta-MIR172h
(20 sentences)

Sequence

guuugcggguguagcaucaucaagauucacaugaaaaggcaaggugaaaugaaauuaauuaagagccauggcuuuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaa
..((((.(((((((((((((((((((((.(((((((((.((.(((....(((......)))...))).)).))))))....))).))))))))))))))))))))).))))...

Structure
-gu    g                     a   ----      g  a   gaaa   aa 
   uugc gguguagcaucaucaagauuc cau    gaaaag ca ggu    uga  u
   |||| ||||||||||||||||||||| |||    |||||| || |||    |||   
   aacg cUACGUCGUAGUAGUUCUAAG gug    uuuuuc gu ccg    auu  u
aau    a                     A   gaag      g  a   -aga   aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR172h

Accession MIMAT0024696
Description Nicotiana tabacum nta-miR172h mature miRNA
Sequence 85 - AGAAUCUUGAUGAUGCUGCAU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28