Stem-loop nta-MIR396a

Accession

MI0021398

Description

Nicotiana tabacum nta-MIR396a precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

3 open access papers mention nta-MIR396a
(17 sentences)

Sequence

cuuuguauuuUUCCACAGCUUUCUUGAACUGcauauauuugaaaacucacaccauauauaaccaauuauuauuauuggaggugaaaauaaaauaaaaaauuguugcgguucaauaaggcugugggaagauacagauagu
.(((((((((((((((((((((.((((((((((..(((((......((((.(((...((((.......))))...)))..)))).....))))).........)))))))))).)))))))))))))))))))))....

Structure

---c                     C          -------ua     gaaaac    -a   uau    cc 
    uuuguauuuUUCCACAGCUUU UUGAACUGca         uauuu      ucac  cca   auaa  a
    ||||||||||||||||||||| ||||||||||         |||||      ||||  |||   ||||  a
    agacauagaagggugucggaa aacuuggcgu         auaaa      agug  ggu   uauu  u
ugau                     u          uguuaaaaa     -auaaa    ga   uau    au 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR396a

• Accession: MIMAT0024708
• Description: Nicotiana tabacum nta-miR396a mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28