miRBase entry: nta-MIR396c

Stem-loop nta-MIR396c


Accession
MI0021400
Description
Nicotiana tabacum nta-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention nta-MIR396c
(16 sentences)

Sequence

uaucaugcuuUUCCACAGCUUUCUUGAACUUcuuucccucugaauuuucaucucuagcaauugaguuauugauaugagauaagauuaagcucugaaaguucaagaaagcugugggaaaacauggugaa
(((((((.(((((((((((((((((((((((...((...((.((((((.(((((...((((......))))....))))))))))).))....))))))))))))))))))))))))).)))))))..

Structure
--       c                       cuu  -ccu  g      c     -uag    ug 
  uaucaug uuUUCCACAGCUUUCUUGAACUU   uc    cu aauuuu aucuc    caau  a
  ||||||| |||||||||||||||||||||||   ||    || |||||| |||||    ||||   
  gugguac aaagggugucgaaagaacuugaa   ag    ga uuagaa uagag    guua  g
aa       a                       ---  ucuc  a      -     uaua    uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR396c

Accession MIMAT0024710
Description Nicotiana tabacum nta-miR396c mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28