Stem-loop nta-MIR397

Accession

MI0021401

Description

Nicotiana tabacum nta-MIR397 precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

3 open access papers mention nta-MIR397
(10 sentences)

Sequence

uagaaacaucAUUGAGUGCAGCGUUGAUGUcaauuucugugaagucuuuaauuuggcauuuggucuuuuugccacuuuuuccaauucguugucaucugcgcugcacucaaucauguuuuuag
(((((((((.((((((((((((((.((((.((((......(((......((..(((((...........)))))..))......))))))).)))).)))))))))))))).))))))))).

Structure

-         c              U    U    uucugu   gucuuu  uu     uuug 
 uagaaacau AUUGAGUGCAGCGU GAUG caau      gaa      aa  uggca    g
 ||||||||| |||||||||||||| |||| ||||      |||      ||  |||||    u
 auuuuugua uaacucacgucgcg cuac guug      cuu      uu  accgu    c
g         c              u    u    ------   aaccuu  uc     uuuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR397

• Accession: MIMAT0024711
• Description: Nicotiana tabacum nta-miR397 mature miRNA
• Sequence: 11 - AUUGAGUGCAGCGUUGAUGU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28