miRBase entry: nta-MIR398

Stem-loop nta-MIR398


Accession
MI0021402
Description
Nicotiana tabacum nta-MIR398 precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
6 open access papers mention nta-MIR398
(20 sentences)

Sequence

ugucaacaggggcaaucugagaucacauguugguacuuuucuuuuuucucuguaaaugacaagugugguuucaauaucucaauaUGUGUUCUCAGGUCGCCCCUGuagagcua
..((.((((((((.((((((((.(((((((((((((((.((.(((........))).)).))))).............)))))))))).)))))))).)))))))).))....

Structure
--ug  a        a        u          -------------     u  u   uuc 
    uc acaggggc aucugaga cacauguugg             uacuu uc uuu   u
    || |||||||| |||||||| ||||||||||             ||||| || |||    
    ag uGUCCCCG UGGACUCU GUGUauaacu             gugaa ag aaa   c
aucg  a        C        U          cuauaacuuuggu     c  u   ugu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR398

Accession MIMAT0024712
Description Nicotiana tabacum nta-miR398 mature miRNA
Sequence 85 - UGUGUUCUCAGGUCGCCCCUG - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28