miRBase entry: nta-MIR399b

Stem-loop nta-MIR399b


Accession
MI0021404
Description
Nicotiana tabacum nta-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention nta-MIR399b
(11 sentences)

Sequence

aacagugauagggcuacucucuauuggcaugcaguuauauauguagugacuccacuucauaauauaauuuagcugacaCGCCAAAGGAGAGCUGCCCUGuuacugucuc
.(((((((((((((..((((((.(((((.((((((((((((((.((((....)))).))).))))).....)))).)).))))).))))))..)))))))))))))...

Structure
--a             ua      a     a  -    -----     -   u    a 
   acagugauagggc  cucucu uuggc ug cagu     uauau aug agug c
   |||||||||||||  |||||| ||||| || ||||     ||||| ||| ||||  
   ugucauuGUCCCG  GAGAGG AACCG ac gucg     auaua uac ucac u
cuc             UC      A     C  a    auuua     a   u    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR399b

Accession MIMAT0024714
Description Nicotiana tabacum nta-miR399b mature miRNA
Sequence 79 - CGCCAAAGGAGAGCUGCCCUG - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28