miRBase entry: nta-MIR408

Stem-loop nta-MIR408


Accession
MI0021410
Description
Nicotiana tabacum nta-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
3 open access papers mention nta-MIR408
(7 sentences)

Sequence

gagaggauagacagggacgagguagagcaugagaugugcaauuuuugcuugcccauucuaUGCACUGCCUCUUCCCUGGCUcuccucccuc
..(((((.((.((((((.(((((((.(((((.((((.((((.......)))).)))).))))).))))))).)))))).)).)))))....

Structure
--ga     u  a      c       a     a    u    uu 
    gagga ag caggga gagguag gcaug gaug gcaa  u
    ||||| || |||||| ||||||| ||||| |||| ||||  u
    cuccu UC GUCCCU CUCCGUC CGUau uuac cguu  u
cucc     c  G      U       A     c    c    cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR408

Accession MIMAT0024720
Description Nicotiana tabacum nta-miR408 mature miRNA
Sequence 61 - UGCACUGCCUCUUCCCUGGCU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28