miRBase entry: nta-MIR1919

Stem-loop nta-MIR1919


Accession
MI0021416
Description
Nicotiana tabacum nta-MIR1919 precursor miRNA
Gene family
MIPF0000582; MIR1919

Literature search
1 open access papers mention nta-MIR1919
(2 sentences)

Sequence

ccggugcuccugucgcagaugacuuucgcccuucucuacaacgacccuucaucaauuuacaaugaagaaaucaaauaauucaguguuuuucuacuuggaggguuuuuagugugacaaGAGCGAGUCAUCUGUGACAGGauaauggaag
(((....((((((((((((((((..((((.(((.(((((((.(((((((((.......(((.((((............)))).))).........))))))))).)).))).)).))).))))))))))))))))))))...)))...

Structure
---   gugc                uu    c   c  -   -  c         --ucaauuu   a    gaaau 
   ccg    uccugucgcagaugac  ucgc cuu uc uac aa gacccuuca         aca ugaa     c
   |||    ||||||||||||||||  |||| ||| || ||| || |||||||||         ||| ||||      
   ggu    aGGACAGUGUCUACUG  AGCG Gaa ag gug uu uugggaggu         ugu acuu     a
gaa   -aau                --    A   c  u   a  u         ucaucuuuu   g    aauaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR1919

Accession MIMAT0024726
Description Nicotiana tabacum nta-miR1919 mature miRNA
Sequence 118 - GAGCGAGUCAUCUGUGACAGG - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28