miRBase entry: nta-MIR6025e

Stem-loop nta-MIR6025e


Accession
MI0021423
Description
Nicotiana tabacum nta-MIR6025e precursor miRNA
Gene family
MIPF0001375; MIR6025

Literature search
1 open access papers mention nta-MIR6025e
(1 sentences)

Sequence

cguaccuggauguuaucucaguguuggcaugcauaaguuggguaagacauaucugaucaaaaauauuuuuugagaugagauggaauauauauauauauauauauauauauauauauauauauauauugguguuuuaccugguccaggcaUGCCAAUUAUAGAGAUGACAUCuagguugggg
(..((((((((((((((((...((((((((((.....(((((((((((((((((.(((.((((....))))..))).))))..((((((((((((((((((((....)))))))))))))))))))).))))))))))))).....))))))))))....))))))))))))))))..)..

Structure
-- gu                -agu          auaag             aucugaucaaaaauauuuuuugagaugagaugg                    u 
  c  accuggauguuaucuc    guuggcaugc     uuggguaagacau                                 aauauauauauauauauaua a
  |  ||||||||||||||||    ||||||||||     |||||||||||||                                 ||||||||||||||||||||  
  g  uggauCUACAGUAGAG    UAACCGUacg     gguccauuuugug                                 uuauauauauauauauauau u
gg gu                AUAU          gaccu             --------------------------------g                    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6025e

Accession MIMAT0024733
Description Nicotiana tabacum nta-miR6025e mature miRNA
Sequence 150 - UGCCAAUUAUAGAGAUGACAUC - 171
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28