Stem-loop hbr-MIR2118

Accession

MI0021474

Description

Hevea brasiliensis hbr-MIR2118 precursor miRNA

Gene family

MIPF0000745; MIR2118

Sequence

cugauauggaaugggagaaugagccucccagaggcgagugGAAAUGGGUGGAUGGGAGUGAacuuaaaccagucugugauugaggucguucccaugccacccauuucuauuguuucuggggguuucucccuuucccaucg
..(((..((((.(((((((...(((.(((((((((.(((((((((((((((((((((((((.(((((.(((...)).).))))).)))))))))).)))))))))))))))))))))))))))))))))).)))).))).

Structure

cu   au    u       uga   u         g               -          a     a -  g 
  gau  ggaa gggagaa   gcc cccagaggc agugGAAAUGGGUGG AUGGGAGUGA cuuaa c ca  
  |||  |||| |||||||   ||| ||||||||| ||||||||||||||| |||||||||| ||||| | || u
  cua  ccuu cccucuu   ugg gggucuuug uuaucuuuacccacc uacccuugcu gaguu g gu  
-g   -c    u       ---   -         -               g          g     a u  c 

Annotation confidence Not enough data

Genome context

AJJZ010268839.1: 1042-1181 [-]

Mature hbr-miR2118

• Accession: MIMAT0024784
• Description: Hevea brasiliensis hbr-miR2118 mature miRNA
• Sequence: 41 - GAAAUGGGUGGAUGGGAGUGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22407387
   Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
   "Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J"
   "Planta (2012) 236:437-445