miRBase entry: hbr-MIR6172

Stem-loop hbr-MIR6172


Accession
MI0021482
Description
Hevea brasiliensis hbr-MIR6172 precursor miRNA


Sequence

uaaauaaagaaacucuugccuaaaccugguccauuaugaauuuaaaacaaaaauauaugagaccuauauauuuaauagauaagucucaccaugucucuuguaucuugaauccaugaUGGACCGUGUUUAAGUAAGAAaac
.............((((((.(((((.((((((((((((.((((((.((((..((((.((((((.(((.(((...))).))).))))))..))))...))))...)))))).)))))))))))).))))).))))))....

Structure
uaaauaaagaaac      c     c            a      --a    -aa    -a      c   a   u 
             ucuugc uaaac ugguccauuaug auuuaa   acaa   auau  ugagac uau uau  
             |||||| ||||| |||||||||||| ||||||   ||||   ||||  |||||| ||| ||| u
             AGAAUG AUUUG GCCAGGUaguac uaaguu   uguu   ugua  acucug aua aua  
---------caaA      A     U            c      cua    cuc    cc      a   g   a 


Annotation confidence Not enough data
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Genome context
AJJZ010735981.1: 42-181 [-]

Database links

Mature hbr-miR6172

Accession MIMAT0024792
Description Hevea brasiliensis hbr-miR6172 mature miRNA
Sequence 117 - UGGACCGUGUUUAAGUAAGAA - 137
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22407387
    Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
    "Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J"
    "Planta (2012) 236:437-445