Stem-loop hbr-MIR398

Accession

MI0021484

Description

Hevea brasiliensis hbr-MIR398 precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

3 open access papers mention hbr-MIR398
(15 sentences)

Sequence

guggagaauuccuacaGGAGCGACCUGAGAUCACAUGuggccacccucacauguucccuuaucuucuauugguuguguuuucguguguucucaggucaccccugccgggcuuuccuccccugcuagauugguaugaugau
..((((((..(((.((((.(.(((((((((.((((((.(((((.((........................)).)).)))..)))))).))))))))).).))))..)))..)).))))..(((((...))))).......

Structure

--------------------gu    -  uu   -a    A C         U      -u   -  c  ucacauguucc 
                      ggag aa  ccu  caGG G GACCUGAGA CACAUG  ggc ca cc           c
                      |||| ||  |||  |||| | ||||||||| ||||||  ||| || ||            
                      ccuc uu  ggg  gucc c cuggacucu gugugc  uug gu gg           u
uaguaguaugguuagaucgucc    c  uc   cc    c a         u      uu   u  u  uuaucuucuau 

Annotation confidence Not enough data

Genome context

KB615850.1: 59266-59405 [-]

Mature hbr-miR398

• Accession: MIMAT0024794
• Description: Hevea brasiliensis hbr-miR398 mature miRNA
• Sequence: 17 - GGAGCGACCUGAGAUCACAUG - 37
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22407387
   Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
   "Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J"
   "Planta (2012) 236:437-445