miRBase entry: hvu-MIR6200

Stem-loop hvu-MIR6200


Accession
MI0021517
Description
Hordeum vulgare hvu-MIR6200 precursor miRNA


Sequence

uugggcuuugUUUGGCCAACUAGAUCUAUGAuucuugcaaugggagaagugcuugguuuuggguucauaccgugcggugaccuuucccagugacagaaggggcagcaaggcacacaucauguuguugccaucaggguaacaagaugggcuuucaucauagauuucagauuguccaucuacaucaugucauc
....((((((((..(((..............((((..((.((((((((.(((.((((..((....)).)))).))).)....))))))).))..))))..)))))))))))..((((.(((((((((((.....)))))))((((((((..((.............))..)))))))))))).))))....

Structure
----------------------------------------------------------------------------uugg        UG   AACUAGAUCUAUGA    ug  a       ---- g   u    uu  g 
                                                                                gcuuugUU  GCC              uucu  ca ugggaga    a ugc uggu  ug g
                                                                                ||||||||  |||              ||||  || |||||||    | ||| ||||  ||  
                                                                                cggaacga  cgg              aaga  gu acccuuu    u gcg gcca  ac u
cuacuguacuacaucuaccuguuagacuuuagauacuacuuucggguagaacaaugggacuaccguuguuguacuacaca        --   ------------gg    ca  g       ccag g   u    -u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR6200

Accession MIMAT0024827
Description Hordeum vulgare hvu-miR6200 mature miRNA
Sequence 11 - UUUGGCCAACUAGAUCUAUGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22489137
    Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
    Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
    Int J Mol Sci (2012) 13:2973-2984