Stem-loop sequence rno-mir-378b

Accession

MI0021540 (change log)

Description

Rattus norvegicus miR-378b stem-loop

Literature search

26 open access papers mention rno-mir-378b
(112 sentences)

Stem-loop

   a   gaaca     c   ga     --aa         -   acu 
5'  gga     gugga uug  gucag    ggucugugu gga   g
    |||     ||||| |||  |||||    ||||||||| |||    
3'  ccu     uaccu agu  caguc    ucagguaca ccu   g
   g   -----     u   ac     acua         g   ccg 

Deep sequencing

12752799 reads, 1.02e+04 reads per million, 508 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr5: 5575616-5575699 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0021540

Mature sequence rno-miR-378b

• Accession: MIMAT0024855
• Sequence: 9 - aguggacuuggagucagaagg - 29
• Deep sequencing: 12752795 reads, 508 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:rno-miR-378b
  • miRDB:rno-miR-378b

References

1. PMID:22470567 "Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation" Meng F, Hackenberg M, Li Z, Yan J, Chen T PLoS One. 7:e34394(2012).