Stem-loop sequence osa-MIR6248

Accession

MI0021596 (change log)

Description

Oryza sativa miR6248 stem-loop

Literature search

2 open access papers mention osa-MIR6248
(6 sentences)

Stem-loop

   ga   aa  c              c            ac           a 
5'   uaa  ug uacuaccucuaucc caaauauaaggg  uuugccuaugu a
     |||  || |||||||||||||| ||||||||||||  |||||||||||  
3'   auu  ac augauggagguagg guuuauauuccu  aaacggauaca u
   gg   cg  u              a            -a           u 

Deep sequencing

57 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 32572985-32573087 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0021596

Mature sequence osa-miR6248

• Accession: MIMAT0024869
• Sequence: 73 - uauuugaggauggagguagua - 93
• Deep sequencing: 51 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice" Liu Q Funct Integr Genomics. 12:649-658(2012).