miRBase entry: osa-MIR6253

Stem-loop osa-MIR6253


Accession
MI0021603
Description
Oryza sativa osa-MIR6253 precursor miRNA

Literature search
3 open access papers mention osa-MIR6253
(5 sentences)

Sequence

16 reads, 18 reads per million, 2 experiments
auaucaauuaGAGGAAAGUGGGCAGUUGGGUUaagcuuauucuguuuucuccaacaaucauuuuccucucauuagaccu
...(((((.((((((((((((...((((((..((((.......))))..))))))..)))))))))))).))).))...

Structure
aua  -   u            GCA      UU    uu 
   uc aau aGAGGAAAGUGG   GUUGGG  aagc  a
   || ||| ||||||||||||   ||||||  ||||  u
   ag uua ucuccuuuuacu   caaccu  uuug  u
ucc  a   c            -aa      cu    uc 


Annotation confidence Not enough data
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Genome context
Chr7: 25019014-25019092 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR6253
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR6253

Accession MIMAT0024876
Description Oryza sativa osa-miR6253 mature miRNA
Sequence 11 - GAGGAAAGUGGGCAGUUGGGUU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22585409
    Novel miRNAs in the control of arsenite levels in rice
    "Liu Q"
    "Funct Integr Genomics (2012) 12:649-658