Stem-loop ppe-MIR6258

Accession

MI0021608

Description

Prunus persica ppe-MIR6258 precursor miRNA

Sequence

ccaaauuuggUUCCAGCUGUAAAGAUCAAGAgagagaggcugacaagucccuucccaugccacagaaaaucacacgcuugauauacaaccuuuggacugcaucuuuguggcaugggaagggaucuuucacccuuccucacucuugcucuuuacagccggaacccauuuuggu
(((((...((((((.((((((((((.((((((.((((((.(((.((((((((((((((((((((((..((((......))))......((...))........))))))))))))))))))).)))))).)))..))).)))))).)))))))))).))))))...))))).

Structure

-     uuu      A          U      a   --   c   c   -                   -------------------aa    ca 
 ccaaa   ggUUCC GCUGUAAAGA CAAGAg gag  agg uga aag ucccuucccaugccacaga                     auca  c
 |||||   |||||| |||||||||| |||||| |||  ||| ||| ||| |||||||||||||||||||                     ||||   
 gguuu   ccaagg cgacauuucu guucuc cuc  ucc acu uuc agggaaggguacgguguuu                     uagu  g
u     uac      c          c      a   cu   c   -   u                   cuacgucagguuuccaacaua    uc 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 230371-230542 [+]

Mature ppe-miR6258

• Accession: MIMAT0027271
• Description: Prunus persica ppe-miR6258 mature miRNA
• Sequence: 11 - UUCCAGCUGUAAAGAUCAAGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371