miRBase entry: ppe-MIR6262

Stem-loop ppe-MIR6262


Accession
MI0021615
Description
Prunus persica ppe-MIR6262 precursor miRNA


Sequence

cacaauaaugUCUUUAGAAAGUUAGAAUUGUgauaauuuuguugagcauacauaaccugccguuauuuuacuuuauuuccuaaacauuucggaccaagguacaaguauucaucaugcaaacaaaacagaauugcagcucaacaaaauaaucacaauucuaacuuucuaaagacauucucguuugaa
......((((((((((((((((((((((((((((.((((((((((((....(((((.....)))))..((((((...(((..........)))..)))))).............(((((...........))))))))))))))))).))))))))))))))))))))))))))))..........

Structure
----cacaau                            a            -------------auacauaaccugccguuauuu      auu   uaaa 
          aaugUCUUUAGAAAGUUAGAAUUGUgau auuuuguugagc                                  uacuuu   ucc    c
          |||||||||||||||||||||||||||| ||||||||||||                                  ||||||   |||     
          uuacagaaaucuuucaaucuuaacacua uaaaacaacucg                                  auggaa   agg    a
aaguuugcuc                            a            acguuaagacaaaacaaacguacuacuuaugaac      -cc   cuuu 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG1: 24878869-24879054 [-]

Database links

Mature ppe-miR6262

Accession MIMAT0027278
Description Prunus persica ppe-miR6262 mature miRNA
Sequence 11 - UCUUUAGAAAGUUAGAAUUGU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371