Stem-loop ppe-MIR828

Accession

MI0021619

Description

Prunus persica ppe-MIR828 precursor miRNA

Gene family

MIPF0000544; MIR828

Literature search

3 open access papers mention ppe-MIR828
(28 sentences)

Sequence

aauccucuuuguaauguuUCUUGCUCAAAUGAGUAUUCCAagccacaguugcaugcaguuugcaagcacuggugcuucugcaauucugagaugcUCAUUUCAGCAAGCAGCGUUAcaagaggaag
..(((((((.((((((((.((((((.(((((((((((.(((((..((((.((.((((...)))).))))))..)))..........)).))))))))))).)))))).)))))))))))))))..

Structure

aa       u        U      C           C  ----------   ca    u  a    g 
  uccucuu guaauguu CUUGCU AAAUGAGUAUU CA          agc  cagu gc ugca  
  ||||||| |||||||| |||||| ||||||||||| ||          |||  |||| || |||| u
  aggagaa cAUUGCGA GAACGA UUUACUcguag gu          ucg  guca cg acgu  
ga       -        C      C           a  cuuaacgucu   ug    -  a    u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG2: 29568537-29568661 [-]

Mature ppe-miR828-5p

• Accession: MIMAT0031168
• Description: Prunus persica ppe-miR828-5p mature miRNA
• Sequence: 19 - UCUUGCUCAAAUGAGUAUUCCA - 40
• Evidence: experimental ; Illumina [2]

Mature ppe-miR828-3p

• Accession: MIMAT0027282
• Description: Prunus persica ppe-miR828-3p mature miRNA
• Sequence: 95 - UCAUUUCAGCAAGCAGCGUUA - 115
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149