miRBase entry: ppe-MIR171a

Stem-loop ppe-MIR171a


Accession
MI0021623
Description
Prunus persica ppe-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
6 open access papers mention ppe-MIR171a
(16 sentences)

Sequence

aauggaucgguuuaacgggauauugguccgguucaauaagaaagcagugcucuaagugcuugagcucugcuuuuUGAUUGAGCCGUGCCAAUAUCacgugccacuguuccuuuau
...(((.((((...(((.(((((((((.(((((((((.(((((((((.((((.........)))).))))))))).))))))))).))))))))).)))...)))).))).....

Structure
--aau   u    uua   g         c         a         u    uaa 
     gga cggu   acg gauauuggu cgguucaau agaaagcag gcuc   g
     ||| ||||   ||| ||||||||| ||||||||| ||||||||| ||||   u
     ccu guca   ugc CUAUAACCG GCCGAGUUA Uuuuucguc cgag   g
uauuu   u    ccg   a         U         G         u    uuc 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG3: 21899734-21899848 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR171a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR171a

Accession MIMAT0027286
Description Prunus persica ppe-miR171a mature miRNA
Sequence 75 - UGAUUGAGCCGUGCCAAUAUC - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371