miRBase entry: ppe-MIR398a

Stem-loop ppe-MIR398a


Accession
MI0021631
Description
Prunus persica ppe-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
5 open access papers mention ppe-MIR398a
(13 sentences)

Sequence

agagggguuccacaGGAGCGACCUGGGAUCACAUGcguccacccucacauuaacacaaugugcugcauugcuaguguauugugcucgaUGUGUUCUCAGGUCGCCCCUGcaguaccuuc
.(((((...(..((((.(((((((((((.(((((.((..(((....((((((...((((((...)))))).))))))...)))..))))))).))))))))))).))))..)..)))))

Structure
a     guu ca    A           U     G  uc   ccuc      aca      g 
 gaggg   c  caGG GCGACCUGGGA CACAU cg  cac    acauua   caaugu  
 |||||   |  |||| ||||||||||| ||||| ||  |||    ||||||   |||||| c
 cuucc   g  GUCC CGCUGGACUCU GUGUa gc  gug    ugugau   guuacg  
-     -au ac    C           U     -  uc   -uua      --c      u 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG4: 20111541-20111659 [+]

Database links

Mature ppe-miR398a-5p

Accession MIMAT0031173
Description Prunus persica ppe-miR398a-5p mature miRNA
Sequence 15 - GGAGCGACCUGGGAUCACAUG - 35
Evidence experimental
Illumina [2]

Mature ppe-miR398a-3p

Accession MIMAT0027294
Description Prunus persica ppe-miR398a-3p mature miRNA
Sequence 89 - UGUGUUCUCAGGUCGCCCCUG - 109
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371

  2. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149