Stem-loop ppe-MIR6273

Accession

MI0021636

Description

Prunus persica ppe-MIR6273 precursor miRNA

Sequence

cugcaaaccaaaaaaaaaaaaaaaaaaucauccagcauuccuuuuacagcuauuuacugauucaguaaguaguaccauaaggAAUGCAGCAUGAUUUUUUUUUugcuuguugauuuguuaaau
..(((((.(((......((((((((((((((.(.(((((((((.....(((((((((((...))))))))))).....))))))))).).)))))))))))))).....))).))))).....

Structure

---cu     c   aaaaaa              c a         uuaca           a 
     gcaaa caa      aaaaaaaaaaucau c gcauuccuu     gcuauuuacug  
     ||||| |||      |||||||||||||| | |||||||||     ||||||||||| u
     uguuu guu      uUUUUUUUUUAGUA G CGUAAggaa     ugaugaaugac  
uaaau     a   -guucg              C A         uacca           u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 3421262-3421384 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR6273

Mature ppe-miR6273

• Accession: MIMAT0027299
• Description: Prunus persica ppe-miR6273 mature miRNA
• Sequence: 83 - AAUGCAGCAUGAUUUUUUUUU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371