Stem-loop ppe-MIR319b

Accession

MI0021640

Description

Prunus persica ppe-MIR319b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

3 open access papers mention ppe-MIR319b
(4 sentences)

Sequence

aggauuuaauUAGCUGCCGAGUCAUUCAUCCAaauacuggguaaauuagcucaggacacccaguaaaugugugaaugaagcgggagacaaauuggaucuua
(((((((((((.(((.(((..((((((((.((..((((((((...............))))))))..)).))))))))..))).)).).))))))))))).

Structure

-           A -  G   AG        C  aa        aaauua 
 aggauuuaauU G CU CCG  UCAUUCAU CA  uacugggu      g
 ||||||||||| | || |||  |||||||| ||  ||||||||      c
 uucuagguuaa c ga ggc  aguaagug gu  augaccca      u
a           a a  g   ga        u  aa        caggac 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 11601224-11601324 [-]

Mature ppe-miR319b

• Accession: MIMAT0027303
• Description: Prunus persica ppe-miR319b mature miRNA
• Sequence: 11 - UAGCUGCCGAGUCAUUCAUCCA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371