Stem-loop ppe-MIR6276

Accession

MI0021642

Description

Prunus persica ppe-MIR6276 precursor miRNA

Sequence

uugcaauugaAAAGGCUCAUACAAAUAUUCCuuguaguaaaagagauguccucuauucuuggcuuccaaauggaauaauuggauguagucaauuugaacauuguugcua
..((((((.(((.((((((..(((.(((((((((.(((..(((((..(....)..))))).)))..)))..)))))).)))..)).))))..))).).....)))))..

Structure

uu     ----- g   -A    -  UA   A      --   -u   aa     au u 
  gcaau     u aAA  GGCU CA  CAA UAUUCC  uug  agu  aagag  g c
  |||||     | |||  |||| ||  ||| ||||||  |||  |||  |||||  |  
  cguug     a uuu  cuga gu  guu auaagg  aac  ucg  uucuu  c c
au     uuaca g   aa    u  ag   a      ua   cu   -g     au u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG6: 8107914-8108022 [-]

Mature ppe-miR6276

• Accession: MIMAT0027305
• Description: Prunus persica ppe-miR6276 mature miRNA
• Sequence: 11 - AAAGGCUCAUACAAAUAUUCC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371