miRBase entry: ppe-MIR6281

Stem-loop ppe-MIR6281


Accession
MI0021648
Description
Prunus persica ppe-MIR6281 precursor miRNA


Sequence

aaggaggucgaguGUUAGAGAUAGAGAGAGUGAGugagagacuaacagucgauauagagugauggcgguggugugaggcguagaacuaagagagugauggcgguggugcgagacugucagucucucauucacucucucugucucugaugcucaaucucuu
.(((((((.((((((((((((((((((((((((((((((((((.((((((..(((...((.((.((..((((............)))).....)).)).))....)))...)))))).)))))))))))))))))))))))))))))))))).)))))))

Structure
a       c                                  a      -ga   -aga  g  g  ---gg    gugag 
 aggaggu gaguGUUAGAGAUAGAGAGAGUGAGugagagacu acaguc   uau    gu au gc     uggu     g
 ||||||| |||||||||||||||||||||||||||||||||| ||||||   |||    || || ||     ||||      
 uucucua cucguagucucugucucucucacuuacucucuga ugucag   gug    cg ua ug     auca     c
-       a                                  c      agc   gugg  g  g  agaga    agaug 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG8: 277601-277760 [+]

Database links

Mature ppe-miR6281

Accession MIMAT0027311
Description Prunus persica ppe-miR6281 mature miRNA
Sequence 14 - GUUAGAGAUAGAGAGAGUGAG - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371