miRBase entry: ppe-MIR6282

Stem-loop ppe-MIR6282


Accession
MI0021649
Description
Prunus persica ppe-MIR6282 precursor miRNA


Sequence

ccccaucuccGUUGAUCGAUGUGGGAUGUUACAccaguaacucugcuugaaaccgaucgguugcaggaugcgagcgaccggucgcaugagacucagccugaaaacgaccggucgucacuuggaaauccaaaucugcuucaacacgacugguugcuagaggaccagucgccucccugcugucaaacucaggaaagaaaauugaggaguuuuuacccgcuccagaaaauucuuuaucuccaguaccacaccaaucacaugcuaagggcuucauucagguaacauauuuucuugaaacugauaacauuaaugaaauaucccaugaugauuuaauuucagaaggca
..((.(((..((((((((.(((((((((((.((...(((.(.((((....((((....))))))))).)))..(((((((((((..(.((.......)).)...)))))))))))...((((....)))).............(((((((((.......)))))))))....((((..((...)).))))((((((..((..(((((........)))))..))..)))))).....((((................(((...)))....((((((...........))))))))))..........)).))))))))))).))).)))))...))).))..

Structure
cc  a   -cc     -   A           A  --------------------------------------------------------------------------------------------------------------------------------------------------------ccaguaacucugcuugaaaccgaucgguugcaggaugcga           -ca g  ac 
  cc ucu   GUUGA UCG UGUGGGAUGUU CA                                                                                                                                                                                                gcgaccggucg   u ag  u
  || |||   ||||| ||| ||||||||||| ||                                                                                                                                                                                                |||||||||||   | ||  c
  gg aga   uaauu agu guacccuauaa gu                                                                                                                                                                                                ugcuggccagc   a uc  a
ac  a   cuu     u   a           a  aauuacaauagucaaaguucuuuuauacaauggacuuacuucgggaaucguacacuaaccacaccaugaccucuauuucuuaaaagaccucgcccauuuuugaggaguuaaaagaaaggacucaaacugucgucccuccgcugaccaggagaucguuggucagcacaacuucgucuaaaccuaaagguucac           aaa g  cg 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG8: 11934930-11935271 [+]

Database links

Mature ppe-miR6282

Accession MIMAT0027312
Description Prunus persica ppe-miR6282 mature miRNA
Sequence 11 - GUUGAUCGAUGUGGGAUGUUACA - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371