miRBase entry: ppe-MIR6293

Stem-loop ppe-MIR6293


Accession
MI0021666
Description
Prunus persica ppe-MIR6293 precursor miRNA


Sequence

ggacuauucaUAAGAGGCUGAUGACUAAAACuuaucccucauaaucccaccaauuucaaggggauuaaggggauaaauuuuagucaucaaccucuuauagauaguccc
((((((((.((((((((.((((((((((((.((((((((..(((((((............))))))).)))))))).)))))))))))).)))))))).)))))))).

Structure
-        c        C            C        ca       accaa 
 ggacuauu aUAAGAGG UGAUGACUAAAA uuaucccu  uaauccc     u
 |||||||| |||||||| |||||||||||| ||||||||  |||||||      
 ccugauag uauucucc acuacugauuuu aauagggg  auuaggg     u
c        a        a            a        -a       gaacu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG5: 2922247-2922354 [+]

Database links

Mature ppe-miR6293

Accession MIMAT0027329
Description Prunus persica ppe-miR6293 mature miRNA
Sequence 11 - UAAGAGGCUGAUGACUAAAAC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371