miRBase entry: ppe-MIR6295

Stem-loop ppe-MIR6295


Accession
MI0021668
Description
Prunus persica ppe-MIR6295 precursor miRNA


Sequence

ucaaaaaugcugaaucaucaucuguccucaagcucuguuauucaauaaguaacuuguccucccccacagcuuacacauucuuuuucuuuuuacuguuggucauuuuuaucucauuuaucuuuaguucacauuugacgaggugagauuucuaaauugcaaaagugucaacucaugagauuuuuaccaagggaacgcaaguugagguuagcagugaugaagaggguuuaaugguacuuuguuugcugcaacuauaguggaaacugugggggaggacaaguuccuuauugaauaccagagcuuGAGGACAGAAGAUGAUUCAGCauuucugag
(((.(((((((((((((((.(((((((((((((((((.(((((((((((.(((((((((((((((((((.(..(((................((.(((((.......(((((((........(((((((.((((.(((....((....))...))))))).)))..)))).)))))))....))))).))(((....)))..((((.(((((...(((.(((((........))))).))))))))))))...)))..).))))))))))))))))))).))))))))))).))))))))))))))))).))))))))))))))).))).

Structure
-   a               a                 u           u                   c ua   -----------------------------------------------auucuuuuucuuuuua  g     cauuuuu       uuaucuuu    --   a    a   ggug  a 
 uca aaaugcugaaucauc ucuguccucaagcucug uauucaauaag aacuuguccucccccacag u  cac                                                               cu uuggu       aucucau        aguu  cac uuug cga    ag u
 ||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |  |||                                                               || |||||       |||||||        ||||  ||| |||| |||    ||  
 agu uuuaCGACUUAGUAG AGACAGGAGuucgagac auaaguuauuc uugaacaggaggggguguc a  gug                                                               gg aacca       uagagua        ucaa  gug aaac guu    uc u
g   c               A                 c           c                   a ag   auaucaacgucguuuguuucaugguaauuugggagaaguagugacgauuggaguugaacgcaa  g     ---uuuu       -------c    cu   a    -   -aaa  u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG6: 27549124-27549453 [+]

Database links

Mature ppe-miR6295

Accession MIMAT0027331
Description Prunus persica ppe-miR6295 mature miRNA
Sequence 301 - GAGGACAGAAGAUGAUUCAGC - 321
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371