miRBase entry: ppe-MIR6296

Stem-loop ppe-MIR6296


Accession
MI0021669
Description
Prunus persica ppe-MIR6296 precursor miRNA


Sequence

cgguuaagaaauaaggucucaccuaagggccauauauaaaacccucacuauugaauucuugcauacauuuguacauagaauauauagugagugccuuaucUAAGGCCCUUAGAUGAGACCCcaucuuaacc
.((((((((.....(((((((.(((((((((.((.((((..(.((((((((...(((((((((......))))...)))))..)))))))).)..)))).)).))))))))).)))))))...))))))))

Structure
c        aauaa       c         a  u    aa c        uga     ---    ua 
 gguuaaga     ggucuca cuaagggcc ua auaa  c cucacuau   auucu   ugca  c
 ||||||||     ||||||| ||||||||| || ||||  | ||||||||   |||||   ||||   
 ccaauucu     CCAGAGU GAUUCCCGG AU uauu  g gagugaua   uaaga   augu  a
-        --acC       A         A  c    cc u        -ua     uac    uu 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG6: 30127057-30127187 [+]

Database links

Mature ppe-miR6296

Accession MIMAT0027332
Description Prunus persica ppe-miR6296 mature miRNA
Sequence 101 - UAAGGCCCUUAGAUGAGACCC - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371