Stem-loop ppe-MIR6297a

Accession

MI0021672

Description

Prunus persica ppe-MIR6297a precursor miRNA

Gene family

MIPF0001754; MIR6297

Sequence

cgcgcgaagugacuuugcgcgacgaauuauuuuucaucgcgcaaaauguggucgcgcaagacuuugagugacgaguuucaaguuucgucgcgcaaaaugacuuugagcgacgAAUAAUUUUUCGUCGCGCAAAAUuuggucgcgu
.((((((...((.(((((((((((((..(((.(((.((((.((((.((((....))))....((((.((((((((........)))))))).)))).....)))).)))).))).)))..))))))))))))).))...))))))

Structure

c      agu  c             uu   u   a    g    auguggucgcgcaagac    a        uuu 
 gcgcga   ga uuugcgcgacgaa  auu uuc ucgc caaa                 uuug gugacgag   c
 ||||||   || |||||||||||||  ||| ||| |||| ||||                 |||| ||||||||    
 ugcgcu   uU AAACGCGCUGCUU  UAA AAg agcg guuu                 aaac cgcugcuu   a
-      ggu  A             UU   U   c    a    ------------cagua    g        uga 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 6394030-6394174 [+]

Mature ppe-miR6297a

• Accession: MIMAT0027335
• Description: Prunus persica ppe-miR6297a mature miRNA
• Sequence: 113 - AAUAAUUUUUCGUCGCGCAAAAU - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371