Stem-loop sequence gma-MIR156aa

Accession

MI0021680 (change log)

Description

Glycine max miR156aa stem-loop

Gene family

MIPF0000010; MIR159

Literature search

40 open access papers mention gma-MIR156aa
(162 sentences)

Stem-loop

   uaaa  caag            g          uu      ggugau     a    ag  g   -       guu    u      cc    a g 
5'     cu    uuggagcucucu cacuccagug  gaagga      gguaa cccu  cu cua auucaug   accu uggcuu  caua g a
       ||    |||||||||||| ||||||||||  ||||||      ||||| ||||  || ||| |||||||   |||| ||||||  |||| |  
3'     ga    agccucgaggga gugagguuau  uuuucu      ccguu gggg  ga ggu uaaguac   uggg acugaa  gugu c a
   uccg  -uua            a          gg      --aguu     -    ca  -   a       auu    u      -a    a g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr16: 2833375-2833561 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR156aa

• gma-MIR156aa: chr16: 2833375-2833561 [-]
• gma-MIR159c: chr16: 2830034-2830218 [-]

Database links

• miRBase Tracker:MI0021680

Mature sequence gma-miR156aa

• Accession: MIMAT0024886
• Sequence: 157 - auuggagugaagggagcu - 174
• Evidence: experimental; Illumina [1]

References

1. PMID:22559273 "Genome organization and characteristics of soybean microRNAs" Turner M, Yu O, Subramanian S BMC Genomics. 13:169(2012).