Stem-loop sequence gma-MIR156ab

Accession

MI0021681 (change log)

Description

Glycine max miR156ab stem-loop

Gene family

MIPF0000010; MIR159

Literature search

40 open access papers mention gma-MIR156ab
(162 sentences)

Stem-loop

   ucaaac  aa            -      c  u  ug  c    augaugggaaaccucugcugcuaauucguggauaccucugguuccguaacaa 
5'       ac  gcuggagcucuc ucacuu aa ua  ag ggau                                                    c
         ||  |||||||||||| |||||| || ||  || ||||                                                     
3'       ug  uggccucgaggg agugaa uu au  uu ucua                                                    a
   ----ua  gg            u      -  u  gu  u    guuccauuauugaaguagaggguuaaguacguuugggaacugaagcuugcau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr7: 5415191-5415378 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR156ab

• gma-MIR156ab: chr7: 5415191-5415378 [+]
• gma-MIR159b: chr7: 5424789-5424974 [-]

Database links

• miRBase Tracker:MI0021681

Mature sequence gma-miR156ab

• Accession: MIMAT0024887
• Sequence: 160 - auuuaagugaugggagcuccg - 180
• Evidence: experimental; Illumina [1]

References

1. PMID:22559273 "Genome organization and characteristics of soybean microRNAs" Turner M, Yu O, Subramanian S BMC Genomics. 13:169(2012).