Stem-loop gma-MIR164k

Accession

MI0021689

Description

Glycine max gma-MIR164k precursor miRNA

Literature search

19 open access papers mention gma-MIR164k
(39 sentences)

Sequence

227488 reads, 812.0 reads per million, 177 experiments

agguccuguUGGAGAAGCAGGGCACGUGCAacucaguucuaguucuagcucuauuauagcugcucuaguuuaucugauuuugCACGUGCUCCCCUUCUCCAACacgauu
.((((.(((((((((((..((((((((((((.((((..((((..(.((((.......)))))..)))).....))))..))))))))))))..))))))))))).))))

Structure

a    c           CA            -c    ---uu    uu u    cu 
 gguc uguUGGAGAAG  GGGCACGUGCAa  ucag     cuag  c agcu  a
 |||| |||||||||||  ||||||||||||  ||||     ||||  | ||||  u
 uuag aCAACCUCUUC  CUCGUGCACguu  aguc     gauc  g ucga  u
-    c           CC            uu    uauuu    uc -    ua 

Annotation confidence High

Genome context

chr20: 46912450-46912558 [-]

Mature gma-miR164k-5p

• Accession: MIMAT0024895
• Description: Glycine max gma-miR164k-5p mature miRNA
• Sequence: 10 - UGGAGAAGCAGGGCACGUGCA - 30
• Evidence: experimental ; Illumina [1]

Mature gma-miR164k-3p

• Accession: MIMAT0054377
• Description: Glycine max gma-miR164k-3p mature miRNA
• Sequence: 83 - CACGUGCUCCCCUUCUCCAAC - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169