miRBase entry: gma-MIR169v

Stem-loop gma-MIR169v


Accession
MI0021699
Description
Glycine max gma-MIR169v precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
23 open access papers mention gma-MIR169v
(98 sentences)

Sequence

cauguaaugCAGCCAAGGAUGACUUGCCggcaagcuucuuuuggcauugugaaucaaguuuuaaaccgugguugcaguuucauugugauaaauugcggauaaaugcggccaaugugcagcauuuuggucacaguaacaccaaaaaucuugaugcugugguugaaaucaggacauguggaccgguuuuuaaaaccuugauugugaagaccuaaucacauuaguuaugcucaaaugcacauuaugcugccuuagaagucaaguguaacuaguugcccggcaagucgucucuggcuacauaaagg
......(((.(((((.(((((((((((((((((((((((...((((.(((((((((((((((((((((((((((((((...)))))....)))))))).......((((((((((.(.(.(((((((((((((((.((..........)).)))))))))))))))).).)))).))).)))...))))))).))))))(((((........))))).......(((......)))..))))).))))..)))))).............))).)))))))))))))).))))).))).....

Structure
caugua   C     A              -   -------------      uuu    u     ---------------------------------------      -       ccgugguugcaguuucauugugauaaauugcggauaaaug   -   -    g a c               a  ccaa 
      aug AGCCA GGAUGACUUGCCgg caa             gcuucu   ggca uguga                                       aucaag uuuuaaa                                        cgg cca augu c g auuuuggucacagua ca    a
      ||| ||||| |||||||||||||| |||             ||||||   |||| |||||                                       |||||| |||||||                                        ||| ||| |||| | | ||||||||||||||| ||     
      uac ucggu ucugcugaacggcc guu             ugaaga   ccgu guauu                                       uaguuc aaaauuu                                        gcc ggu uaca g c uaaaguuggugucgu gu    a
-ggaaa   a     c              c   gaucaaugugaac      -uu    c     acacguaaacucguauugauuacacuaauccagaagugu      c       -------------------------------------uug   a   g    g a -               a  ucua 


Annotation confidence Not enough data
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Genome context
chr13: 15982021-15982322 [-]

Database links

Mature gma-miR169v

Accession MIMAT0024905
Description Glycine max gma-miR169v mature miRNA
Sequence 10 - CAGCCAAGGAUGACUUGCC - 28
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169