Stem-loop gma-MIR393c

Accession

MI0021704

Description

Glycine max gma-MIR393c precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

21 open access papers mention gma-MIR393c
(49 sentences)

Sequence

ggaggaggcaUCCAAAGGGAUCGCAUUGAUCCcaaauuucagauuuauaaauuuuucucuuucccuccccuucucaauauuugggAUCAUGCUAUCCCUUUGGAUUccuccuu
.(((((((.((((((((((((.((((.((((((((((...(((............................)))....)))))))))))))).)))))))))))).)))))))

Structure

g       c            C    U          -uuc   uuuauaaauuuuu 
 gaggagg aUCCAAAGGGAU GCAU GAUCCcaaau    aga             c
 ||||||| |||||||||||| |||| ||||||||||    |||              
 uuccucc UAGGUUUCCCUA CGUA CUAggguuua    ucu             u
-       U            U    -          uaac   uccccucccuuuc 

Annotation confidence Not enough data

Genome context

chr2: 44047954-44048066 [-]

Mature gma-miR393c-5p

• Accession: MIMAT0024910
• Description: Glycine max gma-miR393c-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUCC - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR393c-3p

• Accession: MIMAT0032134
• Description: Glycine max gma-miR393c-3p mature miRNA
• Sequence: 86 - AUCAUGCUAUCCCUUUGGAUU - 106
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153