Stem-loop sequence gma-MIR395h

Accession

MI0021714 (change log)

Description

Glycine max miR395h stem-loop

Gene family

MIPF0000016; MIR395

Literature search

15 open access papers mention gma-MIR395h
(70 sentences)

Stem-loop

   cugu   c  uc   u       cu ug          -gu    -    ---   uauu 
5'     ugg ug  ucc ggaguuc  c  aacgcuucau   gagg ggcu   agc    a
       ||| ||  ||| |||||||  |  ||||||||||   |||| ||||   |||     
3'     acc ac  ggg ucucaag  g  uugugaagua   uucu ccga   uug    u
   ----   a  uc   u       ag gu          acu    u    aua   caaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr1: 4814429-4814541 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR395h

• gma-MIR395i: chr1: 4819957-4820072 [-]
• gma-MIR395h: chr1: 4814429-4814541 [-]

Database links

• miRBase Tracker:MI0021714

Mature sequence gma-miR395h

• Accession: MIMAT0024920
• Sequence: 80 - augaaguguuugggagaacuc - 100
• Evidence: experimental; Illumina [1]

References

1. PMID:22559273 "Genome organization and characteristics of soybean microRNAs" Turner M, Yu O, Subramanian S BMC Genomics. 13:169(2012).