miRBase entry: gma-MIR395k

Stem-loop gma-MIR395k


Accession
MI0021717
Description
Glycine max gma-MIR395k precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
15 open access papers mention gma-MIR395k
(70 sentences)

Sequence

uuguuggcugacucuuggaguuccucugaacgcuucauaugagaggcuaccuaguaaaaaaaucuuucauuaguaaagauaguccuucuucaAUGAAGUGUUUGGGGGAACUCcgggauucaacua
....(((.(((.((((((((((((((((((((((((((..(((((((((((((((.(((.....))).)))))....).))).)).))))..)))))))))))))))))))))))))).))).)))

Structure
uugu   c   c                          au    -  -   - ----     a   a 
    ugg uga ucuuggaguuccucugaacgcuucau  gaga gg cua c    cuagu aaa a
    ||| ||| ||||||||||||||||||||||||||  |||| || ||| |    ||||| ||| a
    auc acu agggcCUCAAGGGGGUUUGUGAAGUA  uucu cc gau g    gauua uuu u
----   a   u                          ac    u  u   a aaau     c   c 


Annotation confidence Not enough data
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Genome context
chr1: 4835314-4835439 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gma-MIR395k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR395k

Accession MIMAT0024923
Description Glycine max gma-miR395k mature miRNA
Sequence 93 - AUGAAGUGUUUGGGGGAACUC - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169