miRBase entry: hme-mir-3338

Stem-loop hme-mir-3338


Accession
MI0021778
Description
Heliconius melpomene hme-mir-3338 precursor miRNA
Gene family
MIPF0001449; mir-3338


Sequence

uuggacaaaauuauaagaauguuucauagcaaacacaguaguguacaaugcuaaguugacauacgcAUGUACUUACUUUGUUUGUUCUggaaucuucuuuaagcuacaacuuggagaaugccuaa
....................((((((.((((((((.(((((.(((((.(((.............))))))))))))).)))))))).)))))).(((((((((......))))))))).......

Structure
------------uuggacaaaauuauaagaau      u        c     u     a   uaagu 
                                guuuca agcaaaca aguag guaca ugc     u
                                |||||| |||||||| ||||| ||||| |||     g
                                uaaggU UUGUUUGU UCAUU CAUGU Acg     a
aauccguaagagguucaacaucgaauuucuuc      C        U     -     -   cauac 


Annotation confidence Not enough data
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Genome context
HE671311: 86489-86613 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hme-mir-3338
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hme-miR-3338

Accession MIMAT0024982
Description Heliconius melpomene hme-miR-3338 mature miRNA
Sequence 67 - AUGUACUUACUUUGUUUGUUCU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22722851
    Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    "The Heliconius Genome Consortium"
    "Nature (2012) 487:94-98