miRBase entry: sma-mir-124a

Stem-loop sma-mir-124a


Accession
MI0021818
Description
Schistosoma mansoni sma-mir-124a precursor miRNA

Literature search
4 open access papers mention sma-mir-124a
(21 sentences)

Sequence

uuuguaugCCAUUUUCCGCGAUUGCCUUGAUGAguuauaaauauuauucauaacaaaaauauUAAGGCACGCGGUGAAUGUCAuccacggagc
((((((((.(((((.(((((..((((((((((.(((((.(((...))).))))).....))))))))))))))).))))).)))..)))))..

Structure
--     --   C     U     AU          ----A     a   a 
  uuugu  aug CAUUU CCGCG  UGCCUUGAUG     guuau aau  
  |||||  ||| ||||| |||||  ||||||||||     ||||| ||| u
  aggca  uAC GUAAG GGCGC  ACGGAAUuau     caaua uua  
cg     cc   U     U     --          aaaaa     c   u 


Annotation confidence Not enough data
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Genome context
Chr_6: 18429525-18429617 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sma-mir-124a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-124a-5p

Accession MIMAT0025025
Description Schistosoma mansoni sma-miR-124a-5p mature miRNA
Sequence 9 - CCAUUUUCCGCGAUUGCCUUGAUGA - 33
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-124a-3p

Accession MIMAT0025026
Description Schistosoma mansoni sma-miR-124a-3p mature miRNA
Sequence 63 - UAAGGCACGCGGUGAAUGUCA - 83
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402